TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0070.9
         (437 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarit...    94  9e-37
TC231809                                                               42  4e-04
TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), p...    40  0.002
TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragm...    37  0.013
TC210984                                                               37  0.023
TC232154 weakly similar to GB|AAF86996.1|9295690|AC005292 F26F24...    31  1.3
TC234320                                                               29  3.7
TC211714 weakly similar to UP|Q94KC2 (Q94KC2) Polyphenol oxidase...    29  4.8

>TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarity to
           ribosomal protein, partial (24%)
          Length = 689

 Score = 94.4 bits (233), Expect(2) = 9e-37
 Identities = 49/79 (62%), Positives = 57/79 (72%)
 Frame = +3

Query: 183 LLQWGESRGFPGMLGSIDCMHWEWKNCPVAWKGQYTRGDHGRPTIMLEAVASQDLWIWHA 242
           L+Q  E RGF  MLGSID +HW+ K C VAWKGQY  GD G PTIML+ V SQ L I HA
Sbjct: 21  LMQICEIRGFQSMLGSIDYLHWK*KTCLVAWKGQYCHGD-GPPTIMLKVVVSQYLRI*HA 197

Query: 243 FFGIAGSNNDITVLNQSPV 261
           + G+ GSNN+I VLN+S V
Sbjct: 198 YLGVEGSNNNINVLNESCV 254



 Score = 77.8 bits (190), Expect(2) = 9e-37
 Identities = 42/95 (44%), Positives = 58/95 (60%)
 Frame = +1

Query: 261 VFNEVLRGAAPMVKFRVNETMYHIGYYLADGIYPEWGTFVKTIPMPQGEKKQKFAKRQEA 320
           VF +V+ G AP+V+F VNE  Y++GY+L  GIY +W T VKTI  P G K++ F + QEA
Sbjct: 250 VFKDVMEGEAPIVQFAVNEIQYNMGYFLTYGIYLDWTTLVKTILRP*GHKRKLFTQYQEA 429

Query: 321 ARKDVERAFGVLQSRFAIVRGPSRWWHPNDMKSII 355
            RKD   +  +    FAI+RG    W  N  ++ I
Sbjct: 430 TRKDRI*STSIW---FAIIRGLVCGWSMNTYQAYI 525



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 345 WWHPNDMKSI--IYACIILHNMIVEDERNTYKGNF--VYEQVNNDISDAEVLSGPIPAFR 400
           W     + SI  +Y CIILHNMIV+DE +TY  N    Y+   N++   ++  G  P   
Sbjct: 492 WLEHEHISSIYYMYVCIILHNMIVKDEPHTYNENIDRQYKYPTNNVLIIDIHIGLHPVLN 671

Query: 401 N 401
           +
Sbjct: 672 H 674


>TC231809 
          Length = 760

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 34/118 (28%), Positives = 55/118 (45%)
 Frame = +3

Query: 311 KQKFAKRQEAARKDVERAFGVLQSRFAIVRGPSRWWHPNDMKSIIYACIILHNMIVEDER 370
           K+ F  R    R  + R+F VL++RF I++   ++        +I  C+ LHN I  +ER
Sbjct: 207 KELFNHRHCFLRNAILRSFNVLKTRFPILKLAPQYSFQIQRDIVIAGCV-LHNFIRREER 383

Query: 371 NTYKGNFVYEQVNNDISDAEVLSGPIPAFRNMLERRAHQIEKSIHRQLQADLVEHIWD 428
           N +  N V      +ISD + L   +P   ++ E+ A     SI   +  D +   WD
Sbjct: 384 NDWIFNSVGGSPVEEISDIDELP-DVPMLSSIQEQLAFSSRDSIASSMWDDFLTK-WD 551


>TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), partial (50%)
          Length = 968

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 23/64 (35%), Positives = 41/64 (63%), Gaps = 3/64 (4%)
 Frame = +1

Query: 311 KQKFAKRQEAARKDVERAFGVLQSRFAIVRGPSRWWHPNDMKS---IIYACIILHNMIVE 367
           K+ F  R  +A+  +ER+FGVL+ R++I+R PS +    D+K+   II  C +L N I +
Sbjct: 589 KELFNLRHASAKNVIERSFGVLKKRWSILRTPSFF----DIKTQIRIINTCFMLRNFIRD 756

Query: 368 DERN 371
           ++++
Sbjct: 757 EQQS 768


>TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment),
           partial (45%)
          Length = 973

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
 Frame = +1

Query: 284 IGYYLADGIYPEW----GTFVKT-IPMPQGEKKQKFAKRQE-------AARKDVERAFGV 331
           + +YL D  YP +    G++ KT   +PQ     +   R E       + +  +ERAFG+
Sbjct: 508 VNFYLVDSCYPTFMGFLGSYNKTRYHLPQFRIGPRIRGRVEVFNYYHSSLQSTIERAFGL 687

Query: 332 LQSRFAIVRGPSRWWHPNDMKSIIYACIILHNMIVEDERNTYKGNFVYEQVNNDISDAE 390
            ++R+ I+   S +        II AC+ +HN I  ++++   G F     +N+  D +
Sbjct: 688 CKARWKILGNMSPF-ALKTQNQIIVACMTIHNFIQRNDKS--DGEFDSLDEDNEYIDTD 855


>TC210984 
          Length = 1085

 Score = 36.6 bits (83), Expect = 0.023
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = +3

Query: 311 KQKFAKRQEAARKDVERAFGVLQSRFAIVRGPSRWWHPNDMKSIIYACIILHNMIVEDER 370
           K+ F  R  + R  +ER FG+ +SRF I +    +      + ++ AC  LHN + ++ R
Sbjct: 423 KELFNLRHASLRNVIERIFGIFKSRFTIFKSAPPFLFKTQAE-LVLACAALHNFLRKECR 599

Query: 371 NTYKGNFVYEQVNNDISDAEVL 392
           +     F  E  +   S + VL
Sbjct: 600 S---DEFPVEPTDESSSSSSVL 656


>TC232154 weakly similar to GB|AAF86996.1|9295690|AC005292 F26F24.7
           {Arabidopsis thaliana;} , partial (40%)
          Length = 576

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 204 WEWKNCPVAWKGQYTRGDHGRPTIMLEAVASQDLWIWHAFFGIAGS 249
           W+W+ C  AW    +   HG   ++L  +     W+W AF    GS
Sbjct: 150 WDWEWCACAWPCYASLWSHGSALLVLVVLP----WLWKAFERKEGS 25


>TC234320 
          Length = 739

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 15/56 (26%), Positives = 25/56 (43%)
 Frame = +1

Query: 186 WGESRGFPGMLGSIDCMHWEWKNCPVAWKGQYTRGDHGRPTIMLEAVASQDLWIWH 241
           WG  RG+        C+    +NC   WK  + + +HG  +I    V  + ++I H
Sbjct: 268 WGSGRGY--------CVR---RNCCYDWKALFRKKNHGAWSIRCRKVGREKMFILH 402


>TC211714 weakly similar to UP|Q94KC2 (Q94KC2) Polyphenol oxidase, partial
           (24%)
          Length = 458

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 173 RRPNEEDMTRLLQWGESRGFPGMLGSIDCMHWEWKNCPVAWKGQYTRGD 221
           R+PN+EDM R    G    F     ++D M   WK  P   +  +   D
Sbjct: 150 RQPNKEDMGRFYSAGRDPAFYSHHANVDRMWNIWKTIPSGKRRDFKNRD 296


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,704,327
Number of Sequences: 63676
Number of extensions: 250584
Number of successful extensions: 1343
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of query: 437
length of database: 12,639,632
effective HSP length: 100
effective length of query: 337
effective length of database: 6,272,032
effective search space: 2113674784
effective search space used: 2113674784
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)