TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0060.4
         (1482 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (ja...   149  2e-40
TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment...   142  1e-33
BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...   130  3e-30
TC213121                                                               84  6e-16
TC205614                                                               54  5e-07
TC224067                                                               38  0.029
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    36  0.14
AW597082 similar to GP|21666452|g polyprotein 1 {Bean pod mottle...    33  1.2
TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)                  31  3.6
AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica cu...    30  6.1
TC230570 similar to UP|MLO6_ARATH (Q94KB7) MLO-like protein 6 (A...    30  7.9

>CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (japonica
            cultivar-group)}, partial (5%)
          Length = 617

 Score =  149 bits (377), Expect(2) = 2e-40
 Identities = 83/146 (56%), Positives = 105/146 (71%)
 Frame = +2

Query: 1028 GTGKTFLWTTLTYKLRSEKKIILNVASSGIASLLLHGGRTAHSLFCIPLNADEDSCCGIV 1087
            GT KTFLW TL+  +RS K ++ +     +ASLLL  G TAHS F IPL   +DS C I 
Sbjct: 11   GTSKTFLWKTLSAGMRS-KGLMSSSCLKRLASLLLPRG*TAHSTFSIPLVIKDDSTCNIN 187

Query: 1088 QGSPKAELLKLSSLIIWDEAPMVSRYAFEALDRTLRDIMRICNPECFNKPFGGKVVVLGG 1147
            QGS +++LL  + LIIWDE P+++++ FEALDRTL+DIM   N +   KPFGGK VVLGG
Sbjct: 188  QGSARSKLLLHTKLIIWDETPVMNKFCFEALDRTLQDIMASQNKDNATKPFGGK-VVLGG 364

Query: 1148 DFRQILPVIPKGSRAEIVMATINSSR 1173
            DFRQILPVI KGSR +IV + IN+S+
Sbjct: 365  DFRQILPVIRKGSRQDIVGSAINASK 442



 Score = 36.2 bits (82), Expect(2) = 2e-40
 Identities = 18/49 (36%), Positives = 30/49 (60%)
 Frame = +1

Query: 1185 ENMRLFSNSETSDVEKIKVFAEWVLDIGDGVLGDYNDGDADIKVPKDTL 1233
            +NMRL + +   D + I+ F +W+L I DG   + ++G+ DI  PK+ L
Sbjct: 460  KNMRLGTTNNNEDRDDIREFVDWILMIRDGNRDEEDEGEIDI--PKNLL 600


>TC231883 weakly similar to UP|Q7QBQ3 (Q7QBQ3) AgCP4056 (Fragment), partial
            (17%)
          Length = 1263

 Score =  142 bits (357), Expect = 1e-33
 Identities = 67/128 (52%), Positives = 91/128 (70%)
 Frame = +1

Query: 522  MYTIEFQKRGLPHAHILLWLSTKDKLHSIELIDSVICAELPDPKVYPLLYQCVSNYMVHG 581
            M+TIEFQKRGLPH  +LL+L   ++  S + ID +I AE+P  +  P LY  V N+MVHG
Sbjct: 877  MHTIEFQKRGLPHIQLLLFLHPDNQYPSSDEIDHIISAEIPSHEDDPELYTLVQNHMVHG 1056

Query: 582  PCGVNRTNSPCMKNGRCSKFFPKNFVEKTSFDSDGYPVYRRRNTGISTNRRGVDLDNGFV 641
            PCG+ +++SPCMK G+CS+F+PK F+  T  D +GY VYRRRN G +  +  V +DN ++
Sbjct: 1057 PCGILQSHSPCMKEGKCSRFYPKIFLPNTLLDLNGYLVYRRRNDGRTILKNSVIVDNRYL 1236

Query: 642  VPYNPKLL 649
            VPYN KLL
Sbjct: 1237 VPYNAKLL 1260


>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
            (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score =  130 bits (328), Expect = 3e-30
 Identities = 60/124 (48%), Positives = 87/124 (69%)
 Frame = +2

Query: 1313 ITTEFLNDIRCSGIPDHKLVLKEGAPVMLMRNLDVSTGLCNGTRIVVTHLRPNVVGGIVI 1372
            ITTEF+N +  S +P+HK+ LK  + +ML+RNLD + GLCN TR+++T    +++   ++
Sbjct: 53   ITTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNSTRLIITMFADHIIEAKIM 232

Query: 1373 SGTHVGRQVFIGRMDLMPTDGSMPIKFQRRQFPLLLSFAMTINKSQGKTLSHVGLYLPNP 1432
            SG   G  V+I R+   P+    P K  RR+FP+++S+AMTINKSQG+ L+ VGLYLP P
Sbjct: 233  SGKGQGNTVYIPRLATSPSQSPWPFKLIRRKFPIIVSYAMTINKSQGQLLASVGLYLPTP 412

Query: 1433 VFSH 1436
            VFSH
Sbjct: 413  VFSH 424


>TC213121 
          Length = 713

 Score = 83.6 bits (205), Expect = 6e-16
 Identities = 44/112 (39%), Positives = 65/112 (57%)
 Frame = +2

Query: 953  SLKDFDNMPCVDSNILIQYGNILLFNELNFDTVEMSKLHVECLNKLNGGQAKIYEEIISA 1012
            S ++F  M      I+  YGN L++NEL +D   ++     C + L    A I+ +I+  
Sbjct: 275  SHRNFPLMSYPIGYIVNPYGNKLIYNELAYDKDILAA*FSRCYHSLTDEHASIFNKIMHM 454

Query: 1013 VNSDGGEFLFVYGYGGTGKTFLWTTLTYKLRSEKKIILNVASSGIASLLLHG 1064
            + +  G   F+YGYGGTGKTF+W TL+  + S   I+L +ASSGI S+LL G
Sbjct: 455  IATQSGGVYFLYGYGGTGKTFVWKTLSSTIHSNSGIVLTMASSGILSMLLPG 610



 Score = 38.5 bits (88), Expect = 0.022
 Identities = 25/77 (32%), Positives = 40/77 (51%)
 Frame = +3

Query: 707 CRYLSPCEAVWRTFSFYIHDKWPPVLKQSYHLPKKQVILFNERAPIDDVLERNKVKKSMF 766
           C Y+SP E   +  +F +H + P V    +HL  +      E   I  +L ++ +K+S+F
Sbjct: 30  CIYVSPPETC*KISAFPMHGRAPTVECLYFHLENQ*P--*KESQQIGSMLSKSTIKESIF 203

Query: 767 LAWMEANCKYPLGRGLT 783
            A M++N  Y  GR LT
Sbjct: 204 TACMDSNKMYHHGRDLT 254


>TC205614 
          Length = 742

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 29/81 (35%), Positives = 46/81 (55%), Gaps = 2/81 (2%)
 Frame = +2

Query: 664 SNCIKYLFKYINKGVDRV-TMSMSVTQSSNEETTVVDEIKQYH-DCRYLSPCEAVWRTFS 721
           SN   ++F YI+   +     S+ +   ++ E + V     Y+ DC+Y+SPCEA WR FS
Sbjct: 497 SNLFSFIFHYISMVENHN*RTSLKLKDLASIEASQVSFPHMYYLDCQYISPCEACWRIFS 676

Query: 722 FYIHDKWPPVLKQSYHLPKKQ 742
           F I+ + P V +  +HLP +Q
Sbjct: 677 FQIYGRIPIVERLYFHLPNEQ 739


>TC224067 
          Length = 415

 Score = 38.1 bits (87), Expect = 0.029
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
 Frame = -2

Query: 1407 LLSFAMTINKSQGKTLSHV-GLYLPNPV-FSHGQLYVAISRVKT--RAGLKILICNEDIS 1462
            L+ + M INKS G+TLS V G+ LP P   SHGQ YV +++V +  R   K + C +   
Sbjct: 363  LVCYTMKINKSHGQTLSQVGGVLLPRPN**SHGQ-YVTLNQV*SY*RRKSKSINCEKYDL 187

Query: 1463 QRDVTKNI 1470
            QR  +KNI
Sbjct: 186  QRIFSKNI 163


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
            protein PIF1, mitochondrial precursor, partial (8%)
          Length = 596

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = +2

Query: 1409 SFAMTINKSQGKTLSHVGLYLPNPVFSHGQLYVAISRVKTRAGLKILICN 1458
            ++AM+I+K QG TL  V   L    F  G +YVA+SRV++  GL +   N
Sbjct: 2    AWAMSIHKCQGMTLERVHTDLSR-AFGCGMVYVALSRVRSLEGLHLSAFN 148


>AW597082 similar to GP|21666452|g polyprotein 1 {Bean pod mottle virus},
           partial (9%)
          Length = 523

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 22/66 (33%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
 Frame = -3

Query: 56  FAFVEAESQMYFDLGEMNMACQYCGAILWYHERAQKAKNAISPD-FSICCMKGKISLPYL 114
           FA ++ E ++ F +GE+ +AC Y   IL  H R  + K    PD ++   +   I  P L
Sbjct: 317 FAAIQYERELSFSIGELPVACAY--TILVTHSRD*QDKLLAFPDYYTQHNVVVSIDSPCL 144

Query: 115 QDAPTL 120
           Q+ PT+
Sbjct: 143 QEPPTI 126


>TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)
          Length = 340

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -3

Query: 1400 QRRQFPLLLSFAMTINKSQGKT 1421
            QR  FPL++ FAMT NKS+G+T
Sbjct: 338  QR**FPLIVCFAMTTNKSEGQT 273


>AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica
           cultivar-group)}, partial (24%)
          Length = 235

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 14/30 (46%), Positives = 19/30 (62%)
 Frame = +1

Query: 795 KKKKEWHPRKKGICIGRMNFVPPGSGELYY 824
           KKKK+   +K+G    R  F PPG G+LY+
Sbjct: 133 KKKKKKKKKKRGGPF*RTQFSPPGVGKLYF 222


>TC230570 similar to UP|MLO6_ARATH (Q94KB7) MLO-like protein 6 (AtMlo6),
            partial (24%)
          Length = 957

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = +3

Query: 1279 NQYVLSLFPGNERTYLSSYSVWSVTEDVGIEADWITTEFLNDIRCSGI--PDHKLVLKEG 1336
            N + L+ F  +   +       S TEDV I    IT   L  I CS +  P + LV + G
Sbjct: 93   NAFQLAFFAWSALQFGIKSCFHSHTEDVVIR---ITMGVLIQILCSYVTLPLYALVTQMG 263

Query: 1337 APVM-LMRNLDVSTGLCNGTRIVVTHLRPNVVGGIVISGT 1375
            + +   + N  V+  L N  +    H+R N VG + +SGT
Sbjct: 264  STMKPTIFNDRVAVALRNWHQTAKKHIRQNRVGPLSLSGT 383


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,811,213
Number of Sequences: 63676
Number of extensions: 1017294
Number of successful extensions: 4461
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4458
length of query: 1482
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1373
effective length of database: 5,698,948
effective search space: 7824655604
effective search space used: 7824655604
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)