BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058a.9
(407 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/ma... 50 2e-06
CD393416 weakly similar to GP|15822703|gb| RNA-binding protein p... 47 2e-05
TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precu... 46 3e-05
TC205462 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MS... 43 2e-04
TC205461 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MS... 43 2e-04
TC207339 similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif (RR... 43 2e-04
TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding ... 42 5e-04
TC204822 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, part... 41 9e-04
TC225318 similar to UP|P93486 (P93486) Glycine-rich RNA-binding ... 41 0.001
TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprot... 41 0.001
TC225319 similar to UP|P93486 (P93486) Glycine-rich RNA-binding ... 40 0.001
BG363508 39 0.006
TC225135 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, ... 39 0.006
BI973231 38 0.009
TC209402 37 0.012
TC214546 similar to PIR|T01932|T01932 RNA binding protein homolo... 37 0.012
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 37 0.016
TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding ... 37 0.016
TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1,... 37 0.021
TC205851 similar to GB|AAG53636.1|12407751|AF291712 initiation f... 36 0.028
>TC215891 similar to GB|AAM78058.1|21928059|AY125548 AT5g61030/maf19_30
{Arabidopsis thaliana;} , partial (41%)
Length = 782
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/75 (37%), Positives = 42/75 (55%)
Frame = +2
Query: 62 VFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGL 121
+FI G+ S D LR+ SK+G+VV+ + R++GR FGF Y ++A AIQ L
Sbjct: 179 LFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQAL 358
Query: 122 NGFRLGSAPLSASLA 136
+G L P+ + A
Sbjct: 359 DGQDLHGRPIRVNYA 403
>CD393416 weakly similar to GP|15822703|gb| RNA-binding protein precursor
{Nicotiana tabacum}, partial (29%)
Length = 733
Score = 47.0 bits (110), Expect = 2e-05
Identities = 23/66 (34%), Positives = 40/66 (59%)
Frame = -2
Query: 58 SCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKA 117
S +F+ GI S D + LR+ +++G+V+++ V R++GR FGF + + A A
Sbjct: 687 SSAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSA 508
Query: 118 IQGLNG 123
IQG++G
Sbjct: 507 IQGMDG 490
>TC217707 similar to UP|Q941H8 (Q941H8) RNA-binding protein precursor,
partial (35%)
Length = 1008
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/66 (34%), Positives = 40/66 (59%)
Frame = +1
Query: 58 SCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKA 117
S +F+ GI S D + LR+ +++G+V+++ V R++GR FGF + + A A
Sbjct: 157 SSAKLFVGGISYSTDDMSLRESPARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASYA 336
Query: 118 IQGLNG 123
IQG++G
Sbjct: 337 IQGMDG 354
>TC205462 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;} , partial (54%)
Length = 1403
Score = 43.1 bits (100), Expect = 2e-04
Identities = 19/55 (34%), Positives = 33/55 (59%)
Frame = +3
Query: 82 KFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLA 136
K+GKVV++F+ + R++G F F RY D+A KA++ L+G + ++ A
Sbjct: 201 KYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFA 365
>TC205461 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;} , partial (69%)
Length = 1148
Score = 43.1 bits (100), Expect = 2e-04
Identities = 19/55 (34%), Positives = 33/55 (59%)
Frame = +3
Query: 82 KFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLA 136
K+GKVV++F+ + R++G F F RY D+A KA++ L+G + ++ A
Sbjct: 204 KYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFA 368
>TC207339 similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif
(RRM)-containing protein-like, partial (63%)
Length = 838
Score = 43.1 bits (100), Expect = 2e-04
Identities = 22/63 (34%), Positives = 37/63 (57%)
Frame = +3
Query: 61 SVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQG 120
++F+ G+ + + LR+ +KFG+VV+ V R SG FGF +Y + A K I+G
Sbjct: 204 NLFVSGLSKRTNTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEG 383
Query: 121 LNG 123
++G
Sbjct: 384 MDG 392
>TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding protein,
partial (87%)
Length = 628
Score = 42.0 bits (97), Expect = 5e-04
Identities = 25/91 (27%), Positives = 42/91 (45%)
Frame = +3
Query: 60 FSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQ 119
+ F+ G+ + D L S++G VV + R++GR FGF + D AI+
Sbjct: 27 YRCFVGGLAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFASEDSMRDAIE 206
Query: 120 GLNGFRLGSAPLSASLAWAPWVCGSPRRGFG 150
G+NG L ++ + A + G G+G
Sbjct: 207 GMNGQNLDGRNITVNEAQSRGSRGGGGGGYG 299
>TC204822 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (67%)
Length = 1232
Score = 41.2 bits (95), Expect = 9e-04
Identities = 29/91 (31%), Positives = 40/91 (43%)
Frame = +3
Query: 58 SCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKA 117
S S+++ + D L+ I SK G VVN V R+SGR FGF + A
Sbjct: 612 SSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDA 791
Query: 118 IQGLNGFRLGSAPLSASLAWAPWVCGSPRRG 148
+ L+G L + S+A PRRG
Sbjct: 792 VAALDGESLDGRAIKVSVAE-----DRPRRG 869
>TC225318 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
PsGRBP, partial (86%)
Length = 749
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/79 (32%), Positives = 36/79 (44%)
Frame = +2
Query: 58 SCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKA 117
S +FI G+ D L+D S FG VV+ V R SGR FGF + + A A
Sbjct: 164 SSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSA 343
Query: 118 IQGLNGFRLGSAPLSASLA 136
+ ++G L + S A
Sbjct: 344 LSAMDGKDLNGRSIRVSYA 400
>TC204093 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1403
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/123 (28%), Positives = 50/123 (40%)
Frame = +2
Query: 14 ISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDY 73
+ A ++ S + A GG G GG S S R V + + D
Sbjct: 527 LDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGP-SDSENR-----VHVSNLAWGVDN 688
Query: 74 LHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSA 133
+ L+ + + G V+ V R+SGR FGF + D+ AIQ LNG L +
Sbjct: 689 VALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRV 868
Query: 134 SLA 136
SLA
Sbjct: 869 SLA 877
Score = 32.3 bits (72), Expect = 0.40
Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 7/146 (4%)
Frame = +2
Query: 32 VAGEEEGGELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFV 91
V + G E D +DG S S + +F+ + + D L ++ G V + V
Sbjct: 257 VVSSDLGQEEDTFSDGDGPSFSPDLK----LFVGNLPFNVDSAQLAELFESAGNVEVVEV 424
Query: 92 QRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGF-------RLGSAPLSASLAWAPWVCGS 144
+ +GR FGF ++A A Q NG+ R+ S P A AP G
Sbjct: 425 IYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYELDGRALRVNSGPPPARNESAPRFRGG 604
Query: 145 PRRGFGLCSQASSAQGQRLAARVLSW 170
FG S R+ L+W
Sbjct: 605 --SSFGSRGGGPSDSENRVHVSNLAW 676
>TC225319 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
PsGRBP, partial (88%)
Length = 1167
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/79 (32%), Positives = 36/79 (44%)
Frame = +3
Query: 58 SCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKA 117
S +FI G+ D L+D S FG VV+ V R SGR FGF + + A A
Sbjct: 360 SSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSA 539
Query: 118 IQGLNGFRLGSAPLSASLA 136
+ ++G L + S A
Sbjct: 540 LSAMDGKDLDGRSIRVSYA 596
>BG363508
Length = 433
Score = 38.5 bits (88), Expect = 0.006
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Frame = +1
Query: 50 RSCSAGRRSCFSV------FID-----GIEESFDYLHLRDICSKFGKVVNLFVQRQRKSG 98
RS S CFS FID G+ S D+ L++ S FG V + + + SG
Sbjct: 22 RSLSVSLPFCFSCCVILPSFIDSEIVSGLSCSVDHKSLKEAFSSFGDVTEVTIVYDKDSG 201
Query: 99 RFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLA 136
R FGF + D A A ++G L PL + A
Sbjct: 202 RSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFA 315
>TC225135 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
(97%)
Length = 2392
Score = 38.5 bits (88), Expect = 0.006
Identities = 21/66 (31%), Positives = 36/66 (53%)
Frame = +3
Query: 61 SVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQG 120
++FI ++ + D+ L D S FG +++ V SG+ +GF ++ + A KAI+
Sbjct: 447 NIFIKNLDRAIDHKALHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFDNEESAQKAIEK 623
Query: 121 LNGFRL 126
LNG L
Sbjct: 624 LNGMLL 641
Score = 35.8 bits (81), Expect = 0.036
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 50 RSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYG 109
R +A + +VF+ + ES L++ +FG + + V R G+ FGF +
Sbjct: 687 RESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDG-DGKSKCFGFVNFE 863
Query: 110 LRDQALKAIQGLNG 123
D A +A++ LNG
Sbjct: 864 NADDAARAVEALNG 905
>BI973231
Length = 422
Score = 37.7 bits (86), Expect = 0.009
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 76 LRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASL 135
L++ S FGK+V+L + + G FGF Y D A +A++ +NG +LGS L +
Sbjct: 182 LQEKFSSFGKIVSLVIAKDN-IGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVAR 358
Query: 136 A 136
A
Sbjct: 359 A 361
>TC209402
Length = 1163
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/76 (23%), Positives = 35/76 (45%)
Frame = +1
Query: 61 SVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQG 120
SV++ + E+ L+++ GK+ + + + RFGF + R A+KA++
Sbjct: 220 SVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAMKALKN 399
Query: 121 LNGFRLGSAPLSASLA 136
+ + L SLA
Sbjct: 400 TEKYEIDGQLLECSLA 447
>TC214546 similar to PIR|T01932|T01932 RNA binding protein homolog - common
tobacco (fragment) {Nicotiana tabacum;} , partial (68%)
Length = 1756
Score = 37.4 bits (85), Expect = 0.012
Identities = 22/86 (25%), Positives = 42/86 (48%)
Frame = +3
Query: 61 SVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQG 120
+V++ + D +L + + G+VV+ V R +++G+ +GF + R A K +Q
Sbjct: 492 TVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 671
Query: 121 LNGFRLGSAPLSASLAWAPWVCGSPR 146
NG + + + L WA + G R
Sbjct: 672 YNGTMMPNTDQAFRLNWATFSAGERR 749
Score = 33.9 bits (76), Expect(2) = 0.033
Identities = 28/102 (27%), Positives = 47/102 (45%)
Frame = +3
Query: 38 GGELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKS 97
G +G GS S G + ++F+ G++ LR +FG+VV++ + +
Sbjct: 1068 GHSANGAVAQGSHS--EGDINNTTIFVGGLDSDTSDEDLRQPFLQFGEVVSVKIPVGKGC 1241
Query: 98 GRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAP 139
G F ++ R A +AIQGLNG +G + S +P
Sbjct: 1242 G------FVQFADRKNAEEAIQGLNGTVIGKQTVRLSWGRSP 1349
Score = 32.3 bits (72), Expect = 0.40
Identities = 23/106 (21%), Positives = 46/106 (42%), Gaps = 1/106 (0%)
Frame = +3
Query: 53 SAGRRSCFSVFIDGIE-ESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLR 111
S+ S S+F+ + + D + ++ + V +GR +GF R+G
Sbjct: 750 SSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDE 929
Query: 112 DQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPRRGFGLCSQASS 157
++ +A+ +NG S P+ +A +P++ +G Q SS
Sbjct: 930 NERTRAMTEMNGVYCSSRPMRIGVA-------TPKKTYGFQQQYSS 1046
Score = 20.8 bits (42), Expect(2) = 0.033
Identities = 5/13 (38%), Positives = 7/13 (53%)
Frame = +2
Query: 137 WAPWVCGSPRRGF 149
W PW+C G+
Sbjct: 1409 WWPWICCETESGY 1447
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 37.0 bits (84), Expect = 0.016
Identities = 30/91 (32%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Frame = -1
Query: 47 GGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGK-VVNLFVQRQRKSGRFFRFGF 105
GG S S R V + + D + L + + GK V+ V R+SGR FGF
Sbjct: 587 GGGPSDSENR-----VHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGF 423
Query: 106 FRYGLRDQALKAIQGLNGFRLGSAPLSASLA 136
+G D+ AIQ L+G L + SLA
Sbjct: 422 VTFGSPDEVKSAIQSLDGVDLNGRAIRVSLA 330
Score = 33.5 bits (75), Expect = 0.18
Identities = 24/103 (23%), Positives = 43/103 (41%)
Frame = +2
Query: 60 FSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQ 119
+ F+ G+ + D L S++G++V + R++GR FGF + AI
Sbjct: 1241 YRCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIG 1420
Query: 120 GLNGFRLGSAPLSASLAWAPWVCGSPRRGFGLCSQASSAQGQR 162
+NG L ++ + A + G G G ++ G R
Sbjct: 1421 AMNGQNLDGRNITVNEAQSRGGGGGGGGGGGGYNRGGGGYGGR 1549
Score = 32.3 bits (72), Expect = 0.40
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 7/155 (4%)
Frame = -1
Query: 23 STTARGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSK 82
S ++R V V+ E+ + G+ DG S S +F+ + S D L ++
Sbjct: 974 SLSSRFVPHVSVLEQEEDTFGDGDGPSFSRD------LKLFVGNLPFSVDSARLAELFES 813
Query: 83 FGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGF-------RLGSAPLSASL 135
G V + V + +GR FGF ++A A + NG+ R+ S P A
Sbjct: 812 AGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPARN 633
Query: 136 AWAPWVCGSPRRGFGLCSQASSAQGQRLAARVLSW 170
AP G FG S R+ L+W
Sbjct: 632 ESAPRFRGG--SSFGSRGGGPSDSENRVHVGNLAW 534
>TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
complete
Length = 748
Score = 37.0 bits (84), Expect = 0.016
Identities = 20/77 (25%), Positives = 37/77 (47%)
Frame = +1
Query: 60 FSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQ 119
+ F+ G+ + D L S++G++V + R++GR FGF + AI+
Sbjct: 88 YRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIE 267
Query: 120 GLNGFRLGSAPLSASLA 136
G+NG L ++ + A
Sbjct: 268 GMNGQNLDGRNITVNEA 318
>TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
(53%)
Length = 452
Score = 36.6 bits (83), Expect = 0.021
Identities = 23/77 (29%), Positives = 35/77 (44%)
Frame = +3
Query: 60 FSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQ 119
+ FI G+ S L+D KFGK++ V + SGR FGF + + +AI
Sbjct: 81 YRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAID 260
Query: 120 GLNGFRLGSAPLSASLA 136
+NG L ++ A
Sbjct: 261 AMNGMDLDGRTITVDRA 311
>TC205851 similar to GB|AAG53636.1|12407751|AF291712 initiation factor 3g
{Arabidopsis thaliana;} , partial (45%)
Length = 641
Score = 36.2 bits (82), Expect = 0.028
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Frame = +1
Query: 5 ARASRSFAPISAAARQIGSTTA--RGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSV 62
A S F AAA + +T +G G G E +D R+ SV
Sbjct: 55 APPSEGFVDKPAAADTVAATAGATKGAYVPPGMRAGAERTTGSDMRRRNDEN------SV 216
Query: 63 FIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLN 122
+ + E L ++ FG V ++V +K+G FGF + R+ A +AI LN
Sbjct: 217 RVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLN 396
Query: 123 GFRLGSAPLSASLAWA 138
G+ G L + WA
Sbjct: 397 GY--GYDNLILRVEWA 438
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.142 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,210,580
Number of Sequences: 63676
Number of extensions: 360762
Number of successful extensions: 3586
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 3468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3579
length of query: 407
length of database: 12,639,632
effective HSP length: 99
effective length of query: 308
effective length of database: 6,335,708
effective search space: 1951398064
effective search space used: 1951398064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0058a.9