BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.5
(504 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP004759 polygalacturonase PG1 488 e-138
TC221920 UP|Q9SWS2 (Q9SWS2) Polygalacturonase PG2, complete 478 e-135
TC208008 homologue to UP|Q94KI6 (Q94KI6) Polygalacturonase (Frag... 314 7e-86
NP501836 dehiscence-related endopolygalaturonase [Glycine max] 239 2e-63
CA801781 159 4e-39
TC231585 weakly similar to UP|Q9M7D3 (Q9M7D3) Polygalacturonase,... 149 2e-36
TC222699 weakly similar to UP|Q9LW07 (Q9LW07) Polygalacturonase-... 128 5e-30
TC223574 homologue to UP|Q9SWS2 (Q9SWS2) Polygalacturonase PG2, ... 116 3e-26
BE346184 101 7e-22
TC212447 weakly similar to UP|O82586 (O82586) Endopolygalacturon... 96 4e-20
TC231081 weakly similar to UP|Q9M7D3 (Q9M7D3) Polygalacturonase,... 68 2e-18
BG650346 similar to GP|6624205|dbj polygalacturonase {Cucumis sa... 84 2e-16
TC223820 weakly similar to UP|Q9M1Y9 (Q9M1Y9) Polygalacturonase-... 70 2e-12
TC217917 similar to UP|Q9M1L0 (Q9M1L0) Polygalacturonase-like pr... 69 5e-12
TC234738 similar to UP|Q94EH4 (Q94EH4) At1g48100/F21D18_17, part... 67 2e-11
TC205977 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like pr... 65 9e-11
CA853310 62 5e-10
CO983452 62 6e-10
TC218204 similar to UP|Q9FJ27 (Q9FJ27) Polygalacturonase-like pr... 59 7e-09
CA937935 similar to PIR|H86239|H862 protein F20B24.8 [imported] ... 57 2e-08
>NP004759 polygalacturonase PG1
Length = 1332
Score = 488 bits (1256), Expect = e-138
Identities = 245/419 (58%), Positives = 299/419 (70%), Gaps = 24/419 (5%)
Frame = +1
Query: 110 SSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCK 169
S+T FNVLD+GAKGDG DDTKAF+ A ACKVE STMVVP+ VF V PISFSGP C+
Sbjct: 124 SATSFNVLDYGAKGDGHADDTKAFEDAWAAACKVEGSTMVVPSGSVFLVKPISFSGPNCE 303
Query: 170 PNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDP 229
PNIVFQLDG IIAPT+S AWG G LQWLEFSKL ITI+GKGVIDG+GSVWW + D P
Sbjct: 304 PNIVFQLDGKIIAPTSSEAWGSGTLQWLEFSKLNTITIRGKGVIDGQGSVWWNN---DSP 474
Query: 230 IDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHL 289
T P+ + GR +P+ KPTALRFYGS TVTGITIQNS Q HL
Sbjct: 475 -------------TYNPTEVMLESNGR-LPSTKPTALRFYGSDGVTVTGITIQNSQQTHL 612
Query: 290 KFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG--------------- 334
KFD+C V V +S+SSPGDSPNTDGIHLQNS++V+I+SS +ACG
Sbjct: 613 KFDSCTNVQVSGISVSSPGDSPNTDGIHLQNSQNVVIYSSTLACGDDCVSIQTGCSDIYV 792
Query: 335 --------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFS 386
HGISIGSLG++NT+ACV N+T+RDV + NT+ GVRIKTWQGGSGSVQ ++FS
Sbjct: 793 HNVNCGPGHGISIGSLGRENTKACVRNVTVRDVTIQNTLTGVRIKTWQGGSGSVQNIMFS 972
Query: 387 NIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCV 446
N+QVS VQ PI IDQ+YCD C N +SAVA++GI+Y +KGTYT +P++FACSD+LPC
Sbjct: 973 NVQVSGVQTPISIDQYYCDGGRCRNESSAVAVSGIHYVNVKGTYTKEPIYFACSDNLPCS 1152
Query: 447 DVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPS-SNRIQTNHDIC 504
++L +++L+ QE + PFCW+ YG+L T T PP++C+Q G PS I +N D C
Sbjct: 1153GITLDTIQLESAQETKNSNVPFCWEAYGELKTTTVPPVECLQRGNPSKEGGINSNIDSC 1329
>TC221920 UP|Q9SWS2 (Q9SWS2) Polygalacturonase PG2, complete
Length = 1660
Score = 478 bits (1229), Expect = e-135
Identities = 238/406 (58%), Positives = 289/406 (70%), Gaps = 23/406 (5%)
Frame = +1
Query: 111 STMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCKP 170
+T FNVLD+GAK G DDTKAFQ ACKVE STMVVP+ VF V PISFSGP C+P
Sbjct: 199 ATTFNVLDYGAKDGGHADDTKAFQNAWVAACKVEGSTMVVPSGSVFLVKPISFSGPNCEP 378
Query: 171 NIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPI 230
NIVFQLDG IIAPT S AWG G LQWLEFSKL ITI+GKGVIDG+GSVWW + D P
Sbjct: 379 NIVFQLDGKIIAPTGSAAWGSGTLQWLEFSKLNKITIRGKGVIDGQGSVWWNN---DSP- 546
Query: 231 DDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLK 290
T P+ + GR +P+ KPTALRFYGS TVTGITIQNS Q HLK
Sbjct: 547 ------------TYNPTEVMLESNGR-LPSTKPTALRFYGSDGVTVTGITIQNSQQTHLK 687
Query: 291 FDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG---------------- 334
FD+C V V +S+SSPGDSPNTDGIHLQNS++V+I+SS +ACG
Sbjct: 688 FDSCTNVQVSGISVSSPGDSPNTDGIHLQNSQNVVIYSSTLACGDDCISIQTGCSDIYVH 867
Query: 335 -------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSN 387
HGISIGSLG++NT+ACV N+T+RDV + NT+ GVRIKTWQGGSGSVQ ++FSN
Sbjct: 868 NVNCGPGHGISIGSLGRENTKACVRNVTVRDVTIQNTLTGVRIKTWQGGSGSVQNIMFSN 1047
Query: 388 IQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVD 447
+QVS VQ+PI+IDQ+YCD C N +SAVA++ I+Y IKGTYT +P++FACSD+LPC
Sbjct: 1048VQVSGVQIPILIDQYYCDGGKCRNESSAVAVSAIHYVNIKGTYTKQPIYFACSDNLPCTG 1227
Query: 448 VSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPS 493
++L ++ L+ QE + PFCW+ YG+L T T PP++C+Q G PS
Sbjct: 1228ITLDTIRLESAQETKNSNVPFCWEAYGELKTKTVPPVECLQRGNPS 1365
>TC208008 homologue to UP|Q94KI6 (Q94KI6) Polygalacturonase (Fragment),
partial (46%)
Length = 1144
Score = 314 bits (804), Expect = 7e-86
Identities = 143/162 (88%), Positives = 156/162 (96%)
Frame = +3
Query: 343 GKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQF 402
GKDNTRACVSNIT+RDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEV+LPIVIDQF
Sbjct: 435 GKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQF 614
Query: 403 YCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVDVSLTSVELKPVQEQY 462
YCDKR+C N TSAV+LAGINYE I+GTYTVKPVHFACSDSLPCVDVSLTSVELKP+QE+Y
Sbjct: 615 YCDKRTCKNQTSAVSLAGINYERIRGTYTVKPVHFACSDSLPCVDVSLTSVELKPIQEKY 794
Query: 463 HLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSNRIQTNHDIC 504
HLY PFCWQTYG+L TPT PPIDC+QIGKP++NRIQT+HD+C
Sbjct: 795 HLYNPFCWQTYGELKTPTVPPIDCLQIGKPTNNRIQTDHDLC 920
>NP501836 dehiscence-related endopolygalaturonase [Glycine max]
Length = 1287
Score = 239 bits (610), Expect = 2e-63
Identities = 140/367 (38%), Positives = 192/367 (52%), Gaps = 25/367 (6%)
Frame = +1
Query: 115 NVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCKPNIVF 174
NV D+GA GDG+TDDT+AF+ +AC + VVP + + P +FSGP C+ +I
Sbjct: 187 NVNDYGAPGDGKTDDTQAFKEAWEVACSSGGAVFVVPRKN-YLLKPFTFSGP-CESDIEV 360
Query: 175 QLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPIDDEE 234
Q+ G I A N + + L WL F + ++++G G IDG G++WWQ+
Sbjct: 361 QISGIIEASENLSDYSEDLTHWLVFDSIEKLSVKGGGTIDGNGNIWWQN----------- 507
Query: 235 KLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNC 294
+ LP +N PTAL FY TV +TI+N Q + F N
Sbjct: 508 ------SCKVNEKLPCKNA---------PTALTFYKCKDLTVEDLTIKNGQQMQVSFQNS 642
Query: 295 NGVLVHDVSISSPGDSPNTDGIHLQN-----------------------SKDVLIHSSKM 331
V V D+++++PGDSPNTDGIH+ N SKDVL
Sbjct: 643 ENVQVSDLTVTAPGDSPNTDGIHVTNTQNIQISNSVIGTGDDCISIVSGSKDVLATDIIC 822
Query: 332 ACGHGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVS 391
GHGISIGSLG + ++ VS IT++ + T NG+RIKTWQGGSGS + F NIQ+
Sbjct: 823 GPGHGISIGSLGAEGSKDFVSGITVKGAQLSGTTNGLRIKTWQGGSGSASNIQFQNIQMD 1002
Query: 392 EVQLPIVIDQFYCDKRS-CTNHTSAVALAGINYEGIKGTYTVK-PVHFACSDSLPCVDVS 449
V PI+IDQ YCD+ + C TSAV + + Y+ I GT V F CS PC +
Sbjct: 1003NVANPIIIDQNYCDQETPCEEQTSAVQIRNVLYQNISGTSASDVGVQFDCSKKFPCQGIV 1182
Query: 450 LTSVELK 456
L +++LK
Sbjct: 1183LQNIDLK 1203
>CA801781
Length = 445
Score = 159 bits (401), Expect = 4e-39
Identities = 77/149 (51%), Positives = 102/149 (67%), Gaps = 2/149 (1%)
Frame = +1
Query: 341 SLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVID 400
SLG N++ACVSN+T+RD + + NG+RIKTWQGG GSV + F NIQ+ V I+ID
Sbjct: 1 SLGVHNSQACVSNLTVRDSIIRESDNGLRIKTWQGGMGSVSSLRFENIQMENVGNCIIID 180
Query: 401 QFYCDKRSCTNHTSAVALAGINYEGIKGTYTVK--PVHFACSDSLPCVDVSLTSVELKPV 458
Q+YC + C N TSAV L ++Y IKGTY V+ P+HFACSD++ C +++L+ VEL P
Sbjct: 181 QYYCMSKECLNQTSAVHLNDVSYSNIKGTYDVRTAPIHFACSDTVACTNITLSEVELLPF 360
Query: 459 QEQYHLYEPFCWQTYGQLMTPTTPPIDCI 487
E L +PFCW YG T T PPI+C+
Sbjct: 361 -EGALLDDPFCWNAYGTQETLTIPPINCL 444
>TC231585 weakly similar to UP|Q9M7D3 (Q9M7D3) Polygalacturonase, partial
(48%)
Length = 878
Score = 149 bits (377), Expect = 2e-36
Identities = 85/224 (37%), Positives = 121/224 (53%), Gaps = 25/224 (11%)
Frame = +2
Query: 276 VTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSS------ 329
V + + NS + HL F NC ++ + + +P SPNTDGIH+ +K V + S
Sbjct: 20 VRNLMLINSQRMHLSFTNCMRIVASHLKVLAPAFSPNTDGIHISATKGVEVRDSVIRTGD 199
Query: 330 ---------------KMACG--HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKT 372
++CG HGISIGSLGK V N+ + V ++NT NGVRIKT
Sbjct: 200 DCISIVRNSSRVWIRNISCGPGHGISIGSLGKSKKWEKVQNVIVDGVYLYNTDNGVRIKT 379
Query: 373 WQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRS-CTNHTSAVALAGINYEGIKGT-Y 430
WQGGSG + F +I + V PI++DQ+YCD R+ C N TSAV + I++ I+GT
Sbjct: 380 WQGGSGFASKITFQHILMENVSNPIIVDQYYCDSRNPCKNETSAVRVENISFIDIQGTSA 559
Query: 431 TVKPVHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYG 474
T + + F+CSD+ PC + L ++ L FCWQ +G
Sbjct: 560 TEEAIKFSCSDAFPCEGLYLENIFLASCFGGN--TSSFCWQAHG 685
>TC222699 weakly similar to UP|Q9LW07 (Q9LW07) Polygalacturonase-like
protein, partial (21%)
Length = 721
Score = 128 bits (322), Expect = 5e-30
Identities = 75/228 (32%), Positives = 115/228 (49%), Gaps = 7/228 (3%)
Frame = +1
Query: 114 FNVLDFGAKGDGRTDDTKAFQATCAMACKVE--ASTMVVPAAYVFYVGPISFSGPYCKPN 171
FNV+D+GA G+G+TDD++AF AC +T+++P F + P+ F GP P
Sbjct: 127 FNVIDYGATGNGQTDDSQAFLKAWKDACNASYGTATLLIPKEKTFMLQPVLFRGPCKPPT 306
Query: 172 IVFQLDGTIIAPTNSNAW---GGGLLQWLEFSKLVGITIQGK--GVIDGRGSVWWQDFPY 226
+ +L GTIIAP AW + W+ F + G+ I+G G+IDG+GS WW +
Sbjct: 307 VHIKLKGTIIAPNKIEAWKLPKSTRMAWIRFRHISGLVIRGGGWGLIDGQGSPWWNSY-- 480
Query: 227 DDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQ 286
+ E K +PTAL F ++G+T NSP+
Sbjct: 481 ---FNTEIK--------------------------RPTALHFRECDYLFLSGLTHINSPK 573
Query: 287 CHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG 334
H+ + CN L+ + + +P +SPNTDGI + S +++I +SKM G
Sbjct: 574 NHISINRCNNSLISKIHMIAPDESPNTDGIDISQSSNIVIKNSKMETG 717
>TC223574 homologue to UP|Q9SWS2 (Q9SWS2) Polygalacturonase PG2, partial
(23%)
Length = 408
Score = 116 bits (290), Expect = 3e-26
Identities = 65/121 (53%), Positives = 79/121 (64%), Gaps = 2/121 (1%)
Frame = +3
Query: 216 RGSVWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPT--ALRFYGSFS 273
+GSVWW + D P T P+ + GR +P+ KPT ALRFYGS
Sbjct: 3 QGSVWWNN---DSP-------------TYNPTEVMLESKGR-LPSTKPTLKALRFYGSDG 131
Query: 274 PTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMAC 333
TVT ITIQNS Q HLKFD+C V V +S+SSPGDSPNTDGIHLQNS++V+I+SS +AC
Sbjct: 132 VTVTCITIQNSQQTHLKFDSCTNVQVSGISVSSPGDSPNTDGIHLQNSQNVVIYSSTLAC 311
Query: 334 G 334
G
Sbjct: 312 G 314
>BE346184
Length = 458
Score = 101 bits (252), Expect = 7e-22
Identities = 64/172 (37%), Positives = 85/172 (49%), Gaps = 25/172 (14%)
Frame = +3
Query: 205 ITIQGKGVIDGRGSVWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQM--PAVK 262
+T+ G G I+G G WW P P + G+ + P
Sbjct: 9 MTLNGTGTIEGNGDKWWD----------------------LPCKPHRGPNGKTLSGPCGS 122
Query: 263 PTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSK 322
P +RF+ S + V G+ IQNSPQ H+ F+ C GVL+ +SISSP SPNTDGIH++NSK
Sbjct: 123 PAMIRFFMSSNLKVKGLKIQNSPQFHMIFNGCQGVLIDKLSISSPKLSPNTDGIHVENSK 302
Query: 323 DVLIHSSK---------------------MACG--HGISIGSLGKDNTRACV 351
V I++S + CG HGISIGSLG N++ACV
Sbjct: 303 YVGIYNSMISNGDDCISIGPGSSNVDIAGLTCGPSHGISIGSLGVHNSQACV 458
>TC212447 weakly similar to UP|O82586 (O82586) Endopolygalacturonase, partial
(54%)
Length = 852
Score = 95.9 bits (237), Expect = 4e-20
Identities = 56/128 (43%), Positives = 75/128 (57%), Gaps = 5/128 (3%)
Frame = +3
Query: 331 MACG--HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTW-QGGSGSVQGVLFSN 387
+ACG HGISIGSLG D V N+T+R T NG RIK+W + SG V+ V F +
Sbjct: 240 VACGPGHGISIGSLGWDLDEPGVKNVTVRKATFSKTQNGFRIKSWGRPSSGFVEDVHFEH 419
Query: 388 IQVSEVQLPIVIDQFYCDKRS-CTNHTSAVALAGINYEGIKGT-YTVKPVHFACSDSLPC 445
+S+VQ PI+IDQ YC R+ C + S V ++ I+Y+ I GT T V F CS PC
Sbjct: 420 ATMSDVQNPIIIDQHYCPFRNGCPSQASGVKISDISYKDIHGTSATQVAVKFDCSSEQPC 599
Query: 446 VDVSLTSV 453
++L +
Sbjct: 600 ERITLEDI 623
Score = 54.7 bits (130), Expect = 1e-07
Identities = 27/66 (40%), Positives = 42/66 (62%), Gaps = 1/66 (1%)
Frame = +2
Query: 276 VTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACGH 335
+TG+T NS H+ + C+ V +H V + + G+SPNTDGIH++ S DV I + ++ G
Sbjct: 11 ITGLTSLNSQLVHILINACHNVKMHGVKLMADGNSPNTDGIHVKFSTDVTILAPRIRTGD 190
Query: 336 G-ISIG 340
IS+G
Sbjct: 191 DCISVG 208
>TC231081 weakly similar to UP|Q9M7D3 (Q9M7D3) Polygalacturonase, partial
(25%)
Length = 690
Score = 68.2 bits (165), Expect(2) = 2e-18
Identities = 50/183 (27%), Positives = 79/183 (42%), Gaps = 1/183 (0%)
Frame = +1
Query: 174 FQLDGTIIAPTNSNAWGG-GLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPIDD 232
F++ GTI+AP + W G +WL F + +T+ G G I+G G WW
Sbjct: 199 FEISGTIVAPQDPVVWHGLNQRKWLYFHGVNHLTVDGGGRINGMGQEWWARS-------- 354
Query: 233 EEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFD 292
+N T P P PTA+ F+ V + + +S + HL F
Sbjct: 355 -----CKINSTN-PCHPA------------PTAMTFHRXQDLXVRHLMLIDSQRMHLSFT 480
Query: 293 NCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACGHGISIGSLGKDNTRACVS 352
NC + + + +P SPNTDGIH+ + V + S + G S + ++R +
Sbjct: 481 NCMRIGAXHLXVLAPAFSPNTDGIHISVTXGVEVMHSXIRTGDDCIXHS--RKSSRVWIR 654
Query: 353 NIT 355
NI+
Sbjct: 655 NIS 663
Score = 42.4 bits (98), Expect(2) = 2e-18
Identities = 23/59 (38%), Positives = 31/59 (51%), Gaps = 1/59 (1%)
Frame = +2
Query: 118 DFGAKGDGRTDDTKAFQATCAMACKVEASTMVV-PAAYVFYVGPISFSGPYCKPNIVFQ 175
D+GAKGDG +DT+AF +AC + VV P F V P+ GP C+ I +
Sbjct: 5 DYGAKGDGLHNDTEAFLEAWKIACSLSGFISVVFPYGKTFLVHPVDIGGP-CRSKITLR 178
>BG650346 similar to GP|6624205|dbj polygalacturonase {Cucumis sativus},
partial (31%)
Length = 414
Score = 83.6 bits (205), Expect = 2e-16
Identities = 48/116 (41%), Positives = 60/116 (51%), Gaps = 24/116 (20%)
Frame = +3
Query: 263 PTALRFYGSFSPTVTGITIQNSPQ-CHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNS 321
PTA S S V G+TIQN PQ H C+ V + V +S+PGDSPNTDGIH+ S
Sbjct: 66 PTAFTIDTSSSIRVKGLTIQNXPQQMHFTISRCDSVRITGVKVSAPGDSPNTDGIHISES 245
Query: 322 KDVLIHSSKMAC-----------------------GHGISIGSLGKDNTRACVSNI 354
+V+I SK+ GHGISIGSLGKDN+ V+ +
Sbjct: 246 TNVIIQDSKIGTGDDCISIVNASSYIKMKRIYCGPGHGISIGSLGKDNSTGIVTKV 413
>TC223820 weakly similar to UP|Q9M1Y9 (Q9M1Y9) Polygalacturonase-like
protein, partial (13%)
Length = 476
Score = 70.1 bits (170), Expect = 2e-12
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Frame = +2
Query: 107 NGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMV-VPAAYVFYVGPISFSG 165
+ +T +NV+DFGAK DG TD T AF + AC + VP ++F G
Sbjct: 80 SSAKATSYNVVDFGAKPDGATDATAAFLSAWNKACSSNKPAGIHVPQGRFLIARAVTFHG 259
Query: 166 PYCKPNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWW 221
I + GT++AP + + G L WL F ++ G++I G GV+D RGS W
Sbjct: 260 QCANRAISITIRGTLVAP-SQYTFVGNSLYWLTFDQVSGVSIHG-GVLDARGSFLW 421
>TC217917 similar to UP|Q9M1L0 (Q9M1L0) Polygalacturonase-like protein
(AT3g42950/F18P9_110), partial (74%)
Length = 1292
Score = 68.9 bits (167), Expect = 5e-12
Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 36/301 (11%)
Frame = +2
Query: 202 LVGITIQG-KGVIDGRGSVWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPA 260
L + I G G I+G+G WW+ + LNHT+ P + +
Sbjct: 143 LKDVVITGHNGTINGQGQTWWKKYRQKR-----------LNHTRGPLVQIMF-------- 265
Query: 261 VKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPG-DSPNTDGIHLQ 319
S +T IT+++SP L +C + + V+I +P +PNTDGI
Sbjct: 266 ----------SSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFGAPNTDGIDPD 415
Query: 320 NSKDVLIHSSKMACG------------HGISIG---------------------SLGKDN 346
+ +D+LI ++ G +GI+ G S+G +
Sbjct: 416 SCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEM 595
Query: 347 TRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDK 406
+ VSN+T+ ++ + ++ GVRIKT +G V+ + + NI V++ IV+ Y +
Sbjct: 596 SGG-VSNVTVENILIWDSRRGVRIKTARGRGAYVRQITYRNITFENVRVGIVMKTDYNEH 772
Query: 407 RSCTNHTSAV-ALAGINYEGIKGTYTVKPVHFACSDSLPCVDVSLTSVELKPVQEQYHLY 465
A+ L I++ + G PV S+ +P +V+ + + ++ H++
Sbjct: 773 PDDGYDPMALPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIF 952
Query: 466 E 466
+
Sbjct: 953 Q 955
>TC234738 similar to UP|Q94EH4 (Q94EH4) At1g48100/F21D18_17, partial (15%)
Length = 489
Score = 67.0 bits (162), Expect = 2e-11
Identities = 26/60 (43%), Positives = 42/60 (69%)
Frame = +2
Query: 435 VHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSS 494
+HFACSD++ C +++L+ +EL P + + L +PFCW YG T T PP+DC++ G+P +
Sbjct: 47 IHFACSDTVACTNITLSEIELLPYEGEL-LDDPFCWNAYGTQETMTIPPLDCLREGEPDT 223
>TC205977 similar to UP|Q84LI7 (Q84LI7) Polygalacturonase-like protein,
partial (88%)
Length = 1966
Score = 64.7 bits (156), Expect = 9e-11
Identities = 90/417 (21%), Positives = 152/417 (35%), Gaps = 77/417 (18%)
Frame = +3
Query: 118 DFGAKGDGRTDDTKAFQATCAMACKVEAS---TMVVPAAYVFYVGPISFSGPYCKPNIVF 174
+FG GDG T +TKAFQA + AS + VP + G + + + +
Sbjct: 402 EFGGVGDGTTLNTKAFQAAIENLSQYAASGGSQLYVPPGK-WLTGSFNLTSHF---TLFL 569
Query: 175 QLDGTIIAPTNSNAW----------------GGGLLQWLEFSKLVGITIQG-KGVIDGRG 217
D I+A + N W GG + + L + I G G IDG+G
Sbjct: 570 HKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGDNGTIDGQG 749
Query: 218 SVWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVT 277
+WWQ F + L +T +P + S + ++
Sbjct: 750 DLWWQKFHKGE-----------LKYT------------------RPYLIEIMYSDNVQIS 842
Query: 278 GITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG--- 334
+T+ NSP ++ + ++V ++I +P SPNTDGI+ + + I + G
Sbjct: 843 NLTLVNSPSWNVHPIYSSNLVVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDC 1022
Query: 335 ---------HGISIGSLGKD---NTRACVS-----------------NITIRDVNMHNTM 365
+GI+ G K C+S ++ D+ N+
Sbjct: 1023VAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSE 1202
Query: 366 NGVRIKTWQGGSGSVQGVLFSNIQVSEVQ---------------------LPIVIDQFYC 404
+GVRIKT G G V+ + + + ++ LP++ + Y
Sbjct: 1203SGVRIKTAVGRGGYVKDIFVRRMTMKTMKWAFWMTGNYGSHADDNYDPNALPVIQNINYR 1382
Query: 405 DKRSCTNHTSAVALAGINYEGIKG----TYTVKPVHFACSDSLPCVDVSLTSVELKP 457
D N T A L GI+ + G T++ A C D++ S ++ P
Sbjct: 1383D-MVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIAGISSDVTP 1550
>CA853310
Length = 555
Score = 62.4 bits (150), Expect = 5e-10
Identities = 51/209 (24%), Positives = 82/209 (38%), Gaps = 23/209 (11%)
Frame = +1
Query: 186 SNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPIDDEEKLIVPLNHTQK 245
+N W W S +V ++++ KG + S WWQ P +
Sbjct: 4 ANTW-----PWPFXSSMV*LSVE-KGPLMVEASAWWQQ---------------PCVGNPQ 120
Query: 246 PSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSIS 305
P + PTA+ F + G T N + H+ +CN ++ ++ +
Sbjct: 121 PGATCR----------PPTAVTFNRCNRLQLKGYTSINPARSHVTLTSCNKGIISNIRLI 270
Query: 306 SPGDSPNTDGIHLQNSKDVLIHSSKMAC-----------------------GHGISIGSL 342
+PG SPNTDGI + S + + +S +A GHGISIGSL
Sbjct: 271 APGTSPNTDGIDISGSTGIQVLNSFIATGDDCIAISAGSSKIKITGITCGPGHGISIGSL 450
Query: 343 GKDNTRACVSNITIRDVNMHNTMNGVRIK 371
G V ++ + + + T+ GVR K
Sbjct: 451 GTRGDTDIVEDVHVENCTLTETLTGVRTK 537
>CO983452
Length = 812
Score = 62.0 bits (149), Expect = 6e-10
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = -1
Query: 131 KAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCKP 170
+AFQ A ACKVE+STM+VPA YVF+VGPISFSGPY P
Sbjct: 122 QAFQEAWAEACKVESSTMLVPADYVFFVGPISFSGPY*NP 3
>TC218204 similar to UP|Q9FJ27 (Q9FJ27) Polygalacturonase-like protein,
partial (51%)
Length = 1014
Score = 58.5 bits (140), Expect = 7e-09
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
Frame = +2
Query: 262 KPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNS 321
+P + F S ++ + +NSP ++ C+ V+V V+I +P DSPNTDGI +S
Sbjct: 14 RPNLVEFVNSQDIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPDSS 193
Query: 322 KDVLIHSSKMACGH-----------------------------------GISIGSLGKDN 346
+V I S ++ G GI+IGS
Sbjct: 194 SNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSYGITIRRVTGSSPFAGIAIGS----E 361
Query: 347 TRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVI 399
T V N+ +N+ N G+ IKT G G ++ + +++ V + I I
Sbjct: 362 TSGGVENVLAEHINLFNMGVGIHIKTNSGRGGLIKNITVAHVYVENARQGIKI 520
>CA937935 similar to PIR|H86239|H862 protein F20B24.8 [imported] -
Arabidopsis thaliana, partial (3%)
Length = 410
Score = 57.0 bits (136), Expect = 2e-08
Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 3/39 (7%)
Frame = +3
Query: 96 DPPSTPPSNDYNGGS---STMFNVLDFGAKGDGRTDDTK 131
D P+TPP YNGG +T FNVLDFGAKGDG++DDTK
Sbjct: 6 DTPTTPPPKGYNGGGHSPTTTFNVLDFGAKGDGKSDDTK 122
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,815,779
Number of Sequences: 63676
Number of extensions: 534516
Number of successful extensions: 11884
Number of sequences better than 10.0: 584
Number of HSP's better than 10.0 without gapping: 6173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9949
length of query: 504
length of database: 12,639,632
effective HSP length: 101
effective length of query: 403
effective length of database: 6,208,356
effective search space: 2501967468
effective search space used: 2501967468
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0008.5